He has compared them to "medieval torture chamber workers" and has vowed to rally against this sort of "absolutism" as this year's general election draws closer.
His comments come after the Government, of which he is a Minister, announced that school children would be taught about climate change.
Education Minister Chris Hipkins said children will be taught the role that science plays in understanding climate change, as well as how it impacts the planet both globally and locally.
They would also be taught how to contribute to reducing and adapting to its impact on everyday life.
Speaking to Radio Waatea today, Jones rejected this advice as "absolutism" - but did not mention Shaw's comments.
In a statement to the New Zealand Herald, Shaw said: "The climate change resource kit for schools is based on science".
Jones was critical of what he described as the "absolutism" which he said was "infecting" the climate-change debate in New Zealand.
"Absolutism is what you hear from bible-bashers," he said.
"Absolutism is what we saw in the medieval days of putting people on the rack because there was an absolute sense of conviction that their perspective was the only perspective."
Jones added that New Zealand First has a tremendous level of interest in how our society adapts to changing weather and changing climate.
"But our party is deeply suspicious of any scientist who starts preaching this gospel of absolutism – we don't like that and we're not going to acquiesce in that.
"If you stand up for industry, that doesn't mean that you are denying the existence of changing climate and changing weather."
He said some of the activists were like the "medieval torture chamber workers [who] don't want you to talk about adaptation.
"They want you to join their shrill voices."
And Jones said he has no plans to stop eating meat.
"I won't be desisting from eating copious qualities of kaimoana [seafood] or meat – that's how I grew up."