Around 60 people were on board the flight, which was organised and announced by the Government early last week.
An Auckland Airport spokesman said the LATAM Airlines flight - which left Lima, Peru, via Santiago, Chile - arrived at 5am and was met by a full contingent of airport operational staff.
It came after ongoing pleas from Kiwis who suddenly found themselves stuck in Peru after the country went into lockdown at short notice last month.
The airport's aeronautical commercial general manager, Scott Tasker, said because commercial flights between New Zealand and South America are suspended right now, this was the only chance for Kiwis to get back home.
"We still have a limited number of commercial services to Asia, the Middle East, Australia and the United States, but this was it for South America," he said.
"So it's great to be able to welcome these New Zealanders back home in these extraordinary times and we're proud to be playing our part."
The 30 covid-19 mercy flights
The Covid-19 outbreak has now seen a total of 30 repatriation flights in and out of Auckland Airport, a spokesman said, carrying around 9500 passengers.
The first mercy flight was an Air New Zealand service on February 6, which brought home Kiwis who had been in the centre of the outbreak - Wuhan, China.
Tasker said fewer repatriation services could be expected in the weeks ahead.
Tasker said airport staff had co-ordinated closely with government agencies to facilitate today's arrival.
"A lot of work goes on behind the scenes between a multitude of different organisations to enable these repatriation flights.
"Together, we have worked hard to develop a smooth process for managing services."
As the coronavirus situation continues, Auckland Airport now sees about 3500 passengers each day.
In comparison, about 58,000 passengers were travelling in and out of the terminal each day in April last year.
