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Prof Pitama, director of the Maori/Indigenous Health Institute at Otago University's Christchurch campus, was ''overwhelmed'' to win the award, which was announced at a function at Parliament last night.
Prof Pitama also won an award for sustained excellence in teaching in the Kaupapa Maori category.
She said she ''began this journey into teaching'' - which had now lasted 14 years - because she wanted Maori patients to be ''validated as both patients and Maori'' in health contexts.
National awards to both Otago University and Otago Polytechnic teachers showed both institutions were ''really encouraging quality teaching'', Prof Pitama said in an interview.
And she was most grateful for the support the university had shown to her, given that her work was in a ''non-traditional area of medicine''.
The Supreme Award comes with a $10,000 prize and the 12 winners of Sustained Excellence in Tertiary Teaching Awards, in Kaupapa Maori and General categories, receive $20,000 each, officials from Ako Aotearoa, the National Centre for Tertiary Teaching Excellence, said.
Two other Otago University staff also received sustained excellence awards in the general category: Graduate Research School dean Prof Rachel Spronken-Smith, and microbiology and immunology senior lecturer Dr Roslyn Kemp.
Clive Humphreys, principal lecturer at the Otago Polytechnic School of Art, also won a general award, the citation terming him a ''truly exceptional'' teacher.
Otago academics had not only won the Supreme Award four years in a row, but had, overall, won it six times in the past 13 years, Otago University vice-chancellor Harlene Hayne said.
Otago Polytechnic communications director Mike Waddell noted that teachers from the polytechnic had won national teaching excellence awards 15 times since 2007, a ''fantastic'' outcome, which, together with Otago University's success, showed Dunedin's tertiary education industry was in good heart.